Did you manage to compile a c2 exported "c2runtime.js" file ?
I tried a quick one (my PF's demo) and it got me a lot of errors.
I guess it requires first to turn jquery into a dll. I might look deeper in it later.
If you did successfuly transformed exported projects, could you post how you did it, a kind of step/step tutorial ?
Also I'm editing the title, since it is Javascript to .exe, and not Java.