If there is no resolution, I will take that path, but I have released multiple versions of this game without issue. I have had very good success using XDK for both iOS and Android so I do not want to stray too quickly, but thanks for the idea.
We've just been alerted to exactly this problem with an app we released last week! All other previous apps work fine, but only our newest one is seemingly incompatible with iOS 10. I'm guessing its an error with XDK, because we're using that too! This is a massive problem for us as we're right in the middle of a big marketing push on the game.