So Mike (at BrashMonkey) pointed me into the right direction. I needed to update my mime type mappings, since out of the box most webservers don't map to Spriter file types. (Dropbox Pro I guess is exception).
Added these lines to my web.config file and it up and runs on AzureWebsites for free.
Am hosting on AZUREwebsite (to save the $10 a month on dropbox pro) and just needed to added these two lines to my web.config file and it worked like a charm.
<!-- start:configuration addition for Spriter -->
<staticContent>
<mimeMap fileExtension=".scml" mimeType="text/xml" />
<mimeMap fileExtension=".scon" mimeType="application/json" />
</staticContent>
<!-- end:configuration addition for Spriter -->