Modding by editing the exported project isn't really feasible - it's not designed to be easy to edit, and in fact in several ways has been deliberately designed to be difficult to reverse engineer, because a lot of people are concerned about that. Minifying helps harden it further against reverse engineering, but it's still not easy to begin with.
If you want your game to be moddable it's probably better to add your own extensibility logic (e.g. a level designer, settings, loading custom images, etc) or just share the source Construct project so other people can tweak it from the editor. Neither of these things really have anything to do with minifying.