I also encountered the bug. I think it has something to do with destroying objects.
Steps to reproduce:
1. Use assimilate joint to bind some objects together
2. Destroy the objects, restart the layout
This results in the following errors:
TypeError: Cannot read property 'DestroyFixture' of null
or
TypeError: Cannot read property 'GetFamilies' of null"
Interestingly, when I remove the joints first and then restart, it sometimes works (but after some time/collisions?) it will also crash.
I also built a minimal example here:
dropbox.com/s/6yxc80kgjd0nm00/LFJS_bug.c3p