CDogs1964 I think so yes, I believe you are trying to do something very similar to myself, I'm also trying to get my games into 'app' versions and not just the wifi ones, so far I have got as far as using the IntelXDK and it does export for the 3 different versions, here is a screen shot http://screenpresso.com/=m9gEc
So basically after you export your game from CS2 using the Cordova option, you then import it into the IntelXDK as a new project, set the required settings in there and then click 'Build' which then makes the required files for your 'app'
I'm not sure if you need to setup in app store or not, I have not got that far with iOS yet, hopefully this is something close to what you ment and I'm not just waffling on <img src="{SMILIES_PATH}/icon_razz.gif" alt=":P" title="Razz"> , this side is pretty new to me